UniProt ID or protein name

Protein biogenesis and transport superfamilies

1.04.01. SEC20 family (1 family) PF03908 (Pfam)
1.04.02. Protein translocase SEC61 complex beta subunit (1 family) PF03911 (Pfam)
1.04.03. Protein translocase SEC61 complex gamma subunit (1 family) PF00584 (Pfam)
1.04.04. Translocon-associated protein (TRAP), alpha subunit (1 family) PF03896 (Pfam)
1.04.05. Translocon-associated protein (TRAP), beta subunit (1 family) PF05753 (Pfam)
1.04.06. Translocon-associated protein (TRAP), delta subunit (1 family) PF05404 (Pfam)
1.04.07. Ribosome receptor (1 family) PF05104 (Pfam)
1.04.08. Mitochondrial inner membrane translocase, subunit Tim50 (1 family) PF03031 (Pfam)
1.04.09. Mitochondrial inner membrane translocase, subunit Tim21 (1 family) PF08294 (Pfam)
1.04.10. Mitochondrial import receptor subunit Tom20 family (1 family) PF02064 (Pfam)
1.04.11. Mitochondrial import receptor subunit Tom22 (1 family) PF04281 (Pfam)
1.04.12. Mitochondrial import receptor subunit Tom70 (1 family) PF00515 (Pfam)
1.04.13. Cytochrome c oxidase assembly protein CtaG/Cox11 (1 family) PF04442 (Pfam)
1.04.14. COX16 family (1 family)
1.04.15. Mitochondrial fission protein (1 family)
1.04.16. Mitochondrial fission factor (1 family) PF05644 (Pfam)
1.04.17. SMCR7 family (1 family)
1.04.18. Outer mitochondrial membrane transport complex protein, Tom37/Metaxin (1 family) PF10568 (Pfam)
1.04.19. AAA ATPase (2 families) PF08740 (Pfam)
1.04.20. DnaJ-related (3 families) PF00026 (Pfam)
1.04.21. Stress-associated endoplasmic reticulum protein (1 family) PF06624 (Pfam)
1.04.22. Endoplasmic reticulum-resident ubiquitin-like domain protein (1 family) PF00240 (Pfam)
1.04.23. Legume-like lectin (1 family) PF03388 (Pfam)
1.04.24. Apical endosomal glycoprotein (1 family) PF00629 (Pfam)
1.04.25. Ribosomal RNA processing 12 homolog (1 family) PF08161 (Pfam)
1.04.27. Neuron-specific endosomal protein (1 family) PF06387 (Pfam)
1.04.29. Sel-1 family (1 family) PF00040 (Pfam)
1.04.30. Ancient ubiquitous protein family (1 family) PF02845 (Pfam)
1.04.31. Plasmalemmal vesicle-associated protein (1 family) PF06637 (Pfam)
1.04.32. Acrosome formation-associated factor (1 family)
1.04.33. VOPP1/ECOP family (1 family)
1.04.34. Cysteine-rich motor neuron protein (1 family) PF00093 (Pfam)
1.04.35. Calreticulin family (1 family) PF00262 (Pfam)
1.04.36. Peroxin-10 family (1 family) PF04757 (Pfam)
1.04.37. Peroxin-11 (1 family) PF05648 (Pfam)
1.04.38. Peroxin 13 family (1 family) PF04088 (Pfam)
1.04.40. Peroxin-26 family (1 family) PF07163 (Pfam)
1.04.41. Ric-3 family (1 family)
1.04.42. Malectin family (1 family) PF11721 (Pfam)
1.04.43. Golgi integral membrane protein 4 family (1 family)
1.04.44. TMEM59 family (1 family) PF12280 (Pfam)

Protein biogenesis and transport (62 proteins)

Family Protein Name Protein ID Species Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.04.01.01. Vesicle transport protein SEC20 SEC20_HUMAN Homo sapiens ER memb. 1 1 29.2 ± 2.6 25 ± 2 -22.0
1.04.02.01. Protein transport protein Sec61 subunit beta SC61B_HUMAN Homo sapiens ER memb. 1 1 30.4 ± 3.8 37 ± 4 -13.4
1.04.03.01. Protein transport protein Sec61 subunit gamma SC61G_HUMAN Homo sapiens ER memb. 1 1 31.6 ± 5.0 31 ± 6 -10.4
1.04.04.01. Translocon-associated protein subunit alpha SSRA_HUMAN Homo sapiens ER memb. 1 1 27.6 ± 3.6 33 ± 4 -19.1
1.04.05.01. Translocon-associated protein subunit beta SSRB_HUMAN Homo sapiens ER memb. 1 1 30.4 ± 2.2 21 ± 16 -5.8
1.04.06.01. Translocon-associated protein subunit delta SSRD_HUMAN Homo sapiens ER memb. 1 1 30.4 ± 3.0 9 ± 7 -7.9
1.04.07.01. Ribosome-binding protein 1 RRBP1_HUMAN Homo sapiens ER memb. 1 1 34.8 ± 2.6 26 ± 3 -11.5
1.04.08.01. Mitochondrial import inner membrane translocase subunit TIM50 TIM50_HUMAN Homo sapiens Mito. Inner memb. 1 1 29.6 ± 3.2 37 ± 2 -6.8
1.04.09.01. TIM21-like protein, mitochondrial TIM21_HUMAN Homo sapiens Mitochondria memb. 1 1 32.0 ± 2.6 33 ± 2 -10.8
1.04.10.01. Mitochondrial import receptor subunit TOM20 homolog TOM20_HUMAN Homo sapiens Mito. Outer memb. 1 1 26.4 ± 3.8 14 ± 4 -5.4
1.04.10.01. TOMM20-like protein 1 TO20L_HUMAN Homo sapiens Mito. Outer memb. 1 1 30.4 ± 3.4 35 ± 2 -10.2
1.04.11.01. Mitochondrial import receptor subunit TOM22 homolog TOM22_HUMAN Homo sapiens Mito. Outer memb. 1 1 30.0 ± 3.4 30 ± 5 -8.5
1.04.12.01. Mitochondrial import receptor subunit TOM70 TOM70_HUMAN Homo sapiens Mito. Outer memb. 1 1 28.8 ± 2.8 23 ± 8 -10.3
1.04.13.01. Cytochrome c oxidase assembly protein COX11, mitochondrial COX11_HUMAN Homo sapiens Mito. Inner memb. 1 1 30.8 ± 3.0 15 ± 7 -11.3
1.04.14.01. Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial COX16_HUMAN Homo sapiens Mitochondria memb. 1 1 27.2 ± 4.4 9 ± 5 -3.5
1.04.15.01. Mitochondrial fission 1 protein FIS1_HUMAN Homo sapiens Mito. Outer memb. 1 1 30.0 ± 3.4 35 ± 7 -8.4
1.04.16.01. Mitochondrial fission factor MFF_HUMAN Homo sapiens Mito. Outer memb. 1 1 28.0 ± 2.0 22 ± 0 -10.7
1.04.17.01. Smith-Magenis syndrome chromosome region candidate gene 7 protein-like MID51_HUMAN Homo sapiens Membrane 1 1 28.8 ± 4.6 28 ± 7 -8.6
1.04.17.01. Smith-Magenis syndrome chromosome region candidate gene 7 protein MID49_HUMAN Homo sapiens Membrane 1 1 30.4 ± 4.4 25 ± 5 -7.4
1.04.18.01. Metaxin-1 MTX1_HUMAN Homo sapiens Mito. Outer memb. 1 1 30.4 ± 3.0 33 ± 6 -11.1
1.04.19.01. Mitochondrial chaperone BCS1 BCS1_HUMAN Homo sapiens Mito. Inner memb. 1 1 29.6 ± 5.0 11 ± 4 -3.2
1.04.19.02. Spastin SPAST_HUMAN Homo sapiens Nucleus inner memb. 1 1 29.6 ± 2.8 32 ± 7 -10.3
1.04.20.01. DnaJ homolog subfamily B member 12 DJB12_HUMAN Homo sapiens Membrane 1 1 30.8 ± 3.2 22 ± 13 -13.1
1.04.20.01. DnaJ homolog subfamily B member 14 DJB14_HUMAN Homo sapiens Membrane 1 1 29.2 ± 4.4 21 ± 5 -13.3
1.04.20.02. DnaJ homolog subfamily C member 1 DNJC1_HUMAN Homo sapiens ER memb. 1 1 29.6 ± 2.6 33 ± 8 -15.0
1.04.20.02. DnaJ homolog subfamily C member 16 DJC16_HUMAN Homo sapiens Membrane 1 1 31.6 ± 3.4 27 ± 6 -15.2
1.04.20.02. DnaJ homolog subfamily C member 4 DNJC4_HUMAN Homo sapiens Membrane 1 1 30.4 ± 4.0 14 ± 4 -10.1
1.04.20.02. DnaJ homolog subfamily C member 18 DJC18_HUMAN Homo sapiens Membrane 1 1 31.6 ± 4.2 30 ± 7 -14.0
1.04.20.02. DnaJ homolog subfamily C member 30 DJC30_HUMAN Homo sapiens Membrane 1 0 28.4 ± 2.0 3 ± 4 -10.5
1.04.20.02. DnaJ homolog subfamily C member 15 DJC15_HUMAN Homo sapiens Membrane 1 1 29.6 ± 3.0 20 ± 3 -7.7
1.04.20.03. Mitochondrial import inner membrane translocase subunit TIM14 TIM14_HUMAN Homo sapiens Mitochondria memb. 1 1 30.8 ± 1.2 45 ± 14 -4.4
1.04.21.01. Stress-associated endoplasmic reticulum protein 2 SERP2_HUMAN Homo sapiens ER memb. 1 1 30.0 ± 2.6 27 ± 14 -12.1
1.04.21.01. Stress-associated endoplasmic reticulum protein 1 SERP1_HUMAN Homo sapiens ER memb. 1 1 30.0 ± 2.8 27 ± 13 -12.5
1.04.22.01. Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein HERP2_HUMAN Homo sapiens Membrane 1 1 25.2 ± 2.2 10 ± 5 -6.6
1.04.23.01. VIP36-like protein LMA2L_HUMAN Homo sapiens ER memb. 1 1 30.8 ± 4.2 48 ± 2 -19.2
1.04.23.01. Protein ERGIC-53 LMAN1_HUMAN Homo sapiens ER memb. 1 1 30.0 ± 3.6 25 ± 9 -17.3
1.04.23.01. Vesicular integral-membrane protein VIP36 LMAN2_HUMAN Homo sapiens ER-Golgi intermed. memb. 1 1 33.6 ± 4.0 27 ± 5 -18.1
1.04.23.01. Protein ERGIC-53-like LMA1L_HUMAN Homo sapiens Membrane 1 1 30.4 ± 5.0 31 ± 6 -6.5
1.04.24.01. Apical endosomal glycoprotein AEGP_HUMAN Homo sapiens Endosome memb. 1 1 29.6 ± 3.0 23 ± 4 -16.5
1.04.25.01. RRP12-like protein RRP12_HUMAN Homo sapiens Nucleus memb. 1 1 30.0 ± 5.2 13 ± 7 -6.6
1.04.27.01. Neuron-specific protein family member 1 NSG1_HUMAN Homo sapiens Golgi memb. 1 1 34.4 ± 2.0 24 ± 1 -21.6
1.04.27.01. Neuron-specific protein family member 2 NSG2_HUMAN Homo sapiens Cytoplas. vesicle memb. 1 1 31.2 ± 3.0 37 ± 5 -18.9
1.04.27.01. Neuron-specific vesicular protein calcyon CALY_HUMAN Homo sapiens Cytoplas. vesicle memb. 1 1 30.0 ± 2.6 21 ± 5 -11.4
1.04.29.01. Protein sel-1 homolog 2 SE1L2_HUMAN Homo sapiens Membrane 1 1 29.6 ± 3.8 21 ± 3 -5.8
1.04.29.01. SEL1-like repeat-containing protein KIAA0746 SE1L3_HUMAN Homo sapiens Membrane 1 1 29.2 ± 2.8 36 ± 4 -15.7
1.04.29.01. Protein sel-1 homolog 1 SE1L1_HUMAN Homo sapiens ER memb. 1 1 28.4 ± 2.2 2 ± 4 -14.0
1.04.30.01. Ancient ubiquitous protein 1 AUP1_HUMAN Homo sapiens ER memb. 1 1 30.0 ± 2.2 16 ± 13 -13.8
1.04.31.01. Plasmalemma vesicle-associated protein PLVAP_HUMAN Homo sapiens Plasma memb. 1 1 32.4 ± 3.4 37 ± 3 -19.5
1.04.32.01. Acrosome formation-associated factor EQTN_HUMAN Homo sapiens Secretory vesicle memb. 1 1 30.4 ± 2.8 37 ± 3 -22.6
1.04.33.01. Vesicular, overexpressed in cancer, prosurvival protein 1 VOPP1_HUMAN Homo sapiens Membrane 1 1 29.6 ± 2.0 37 ± 3 -16.9
1.04.34.01. Cysteine-rich motor neuron 1 protein CRIM1_HUMAN Homo sapiens Plasma memb. 1 1 32.0 ± 3.0 28 ± 7 -14.8
1.04.35.01. Calnexin CALX_HUMAN Homo sapiens ER memb. 1 1 28.8 ± 4.2 36 ± 5 -17.2
1.04.35.01. Calmegin CLGN_HUMAN Homo sapiens ER memb. 1 1 24.0 ± 4.6 39 ± 0 -8.7
1.04.36.01. Peroxisome biogenesis factor 10 PEX10_HUMAN Homo sapiens Peroxisome memb. 1 0 27.2 ± 5.6 37 ± 4 -10.0
1.04.37.01. Peroxisomal membrane protein 11B PX11B_HUMAN Homo sapiens Peroxisome memb. 1 1 30.0 ± 5.8 26 ± 2 -4.2
1.04.38.01. Peroxisomal membrane protein PEX13 PEX13_HUMAN Homo sapiens Peroxisome memb. 1 1 31.6 ± 3.8 29 ± 6 -10.4
1.04.40.01. Peroxisome assembly protein 26 PEX26_HUMAN Homo sapiens Peroxisome memb. 1 1 26.0 ± 2.4 13 ± 1 -4.7
1.04.41.01. Protein RIC-3 RIC3_HUMAN Homo sapiens Golgi memb. 1 1 28.8 ± 5.8 35 ± 11 -8.9
1.04.42.01. Malectin MLEC_HUMAN Homo sapiens ER memb. 1 1 30.0 ± 2.6 15 ± 6 -9.6
1.04.43.01. Golgi integral membrane protein 4 GOLI4_HUMAN Homo sapiens Endosome memb. 1 1 32.0 ± 4.2 31 ± 7 -17.7
1.04.44.01. Transmembrane protein 59-like TM59L_HUMAN Homo sapiens Membrane 1 1 30.0 ± 3.6 32 ± 3 -13.7
1.04.44.01. Transmembrane protein 59 TMM59_HUMAN Homo sapiens Membrane 1 1 30.0 ± 3.0 31 ± 17 -17.7