SYP52_ARATH » Syntaxin-52

SYP52_ARATH » Syntaxin-52
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Topology in Endosome membrane
Topologyendosome lumenal side
cytoplasmic side
SYP52_ARATH » Syntaxin-52 » AtSYP52;
Hydrophobic Thickness 30.8 ± 2.2 Å
Tilt Angle 1 ± 1°
ΔGtransfer -40.5 kcal/mol
ΔGfold -17.5 kcal/mol
Links UniProtKB, Pfam, Interpro, iHOP, STRING
Topology In
TM Segments 209-232 (207-232)
Pathways

SNARE interactions in vesicular transport (KEGG)

PDB none
OPM none
Complexes none
Interactions

SYP21, Complex: SYP21:SYP52

SYP22, Complex: SYP22:SYP52

SYP61, Complex: SYP52:SYP61

VTI11, Complex: SYP52:VTI11, PubMed

Domains

AA: 173-225, PDBID: 1GL2, Subunit D, Seq Identity:32%, SNARE domain

UniProt annotation for SYP52_ARATH » Syntaxin-52
FUNCTION: Vesicle trafficking protein that functions in the secretory pathway.

SUBUNIT: Interacts either with VTI11 and SYP21, or with VTI11 and SYP22 in the prevacuolar compartment, or with VTI12 and SYP61 in the trans-Golgi network to form t-SNARE complexes.

TISSUE SPECIFICITY: Expressed in root, leaf, stem, flower and silique.

MISCELLANEOUS: SYP51 and SYP52 may have redundant functions.

UniProt features for SYP52_ARATH » Syntaxin-52
CHAIN 1 233 Syntaxin-52.
DOMAIN 137 199 t-SNARE coiled-coil homology.
Amino Acid Sequence for SYP52_ARATH » Syntaxin-52
MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL