PCD20_HUMAN » Protocadherin-20

PCD20_HUMAN » Protocadherin-20
Magnify PCD20_HUMAN » Protocadherin-20Enlarged view of image
3D view in GLMol or JMol

gray dot

Download Coordinates

gray dot

Topology in Plasma membrane
Topologyextracellular side
cytoplasmic side
PCD20_HUMAN » Protocadherin-20 » Protocadherin-13;
Hydrophobic Thickness 34.4 ± 3.6 Å
Tilt Angle 26 ± 5°
ΔGtransfer -20.7 kcal/mol
ΔGfold -10.8 kcal/mol
Links UniProtKB, Pfam, Interpro, iHOP, STRING, HGNC, HMDB
Topology Out
TM Segments 859-884 (859-888)
Pathways none
PDB none
OPM none
Complexes none
Interactions

RYK, Complex: RYK:PCD20, PubMed

Domains

AA: 214-311, PDBID: 4ZPL, Subunit A, Seq Identity:36%, Cadherin domain

AA: 325-417, PDBID: 4ZPS, Subunit A, Seq Identity:33%, Cadherin domain

AA: 540-630, PDBID: 4ZPS, Subunit A, Seq Identity:36%, Cadherin domain

AA: 644-733, PDBID: 2WCP, Subunit A, Seq Identity:35%, Cadherin domain

AA: 751-844, PDBID: 2EE0, Subunit A, Seq Identity:29%, Cadherin domain

UniProt annotation for PCD20_HUMAN » Protocadherin-20
FUNCTION: Potential calcium-dependent cell-adhesion protein.
UniProt features for PCD20_HUMAN » Protocadherin-20
SIGNAL 1 33 Potential.
CHAIN 34 924 Protocadherin-20.
DOMAIN 37 182 Cadherin 1.
DOMAIN 183 293 Cadherin 2.
DOMAIN 294 508 Cadherin 3.
DOMAIN 509 612 Cadherin 4.
DOMAIN 613 715 Cadherin 5.
DOMAIN 719 836 Cadherin 6.
Amino Acid Sequence for PCD20_HUMAN » Protocadherin-20
MGRLHRPRSS TSYRNLPHLF LFFLFVGPFS CLGSYSRATE LLYSLNEGLP AGVLIGSLAE DLRLLPRSAG RPDPQSQLPE RTGAEWNPPL SFSLASRGLS GQYVTLDNRS GELHTSAQEI DREALCVEGG GGTAWSGSVS ISSSPSDSCL LLLDVLVLPQ EYFRFVKVKI AIRDINDNAP QFPVSQISVW VPENAPVNTR LAIEHPAVDP DVGINGVQTY RLLDYHGMFT LDVEENENGE RTPYLIVMGA LDRETQDQYV SIIIAEDGGS PPLLGSATLT IGISDINDNC PLFTDSQINV TVYGNATVGT PIAAVQAVDK DLGTNAQITY SYSQKVPQAS KDLFHLDENT GVIKLFSKIG GSVLESHKLT ILANGPGCIP AVITALVSII KVIFRPPEIV PRYIANEIDG VVYLKELEPV NTPIAFFTIR DPEGKYKVNC YLDGEGPFRL SPYKPYNNEY LLETTKPMDY ELQQFYEVAV VAWNSEGFHV KRVIKVQLLD DNDNAPIFLQ PLIELTIEEN NSPNAFLTKL YATDADSEER GQVSYFLGPD APSYFSLDSV TGILTVSTQL DREEKEKYRY TVRAVDCGKP PRESVATVAL TVLDKNDNSP RFINKDFSFF VPENFPGYGE IGVISVTDAD AGRNGWVALS VVNQSDIFVI DTGKGMLRAK VSLDREQQSS YTLWVEAVDG GEPALSSTAK ITILLLDIND NPPLVLFPQS NMSYLLVLPS TLPGSPVTEV YAVDKDTGMN AVIAYSIIGR RGPRPESFRI DPKTGNITLE EALLQTDYGL HRLLVKVSDH GYPEPLHSTV MVNLFVNDTV SNESYIESLL RKEPEINIEE KEPQISIEPT HRKVESVSCM PTLVALSVIS LGSITLVTGM GIYICLRKGE KHPREDENLE VQIPLKGKID LHMRERKPMD ISNI